Publications in peer reviewed journals

39 Publications found
  • Flux Analysis of Free Amino Sugars and Amino Acids in Soils by Isotope Tracing with a Novel Liquid Chromatography/High Resolution Mass Spectrometry Platform

    Hu Y, Zheng Q, Wanek W
    2017 - analytical chemistry, 17: 9192-9200


    Soil fluxomics analysis can provide pivotal information for understanding soil biochemical pathways and their regulation, but direct measurement methods are rare. Here, we describe an approach to measure soil extracellular metabolite (amino sugar and amino acid) concentrations and fluxes based on a 15N isotope pool dilution technique via liquid chromatography and high-resolution mass spectrometry. We produced commercially unavailable 15N and 13C labeled amino sugars and amino acids by hydrolyzing peptidoglycan isolated from isotopically labeled bacterial biomass and used them as tracers (15N) and internal standards (13C). High-resolution (Orbitrap Exactive) MS with a resolution of 50 000 allowed us to separate different stable isotope labeled analogues across a large range of metabolites. The utilization of 13C internal standards greatly improved the accuracy and reliability of absolute quantification. We successfully applied this method to two types of soils and quantified the extracellular gross fluxes of 2 amino sugars, 18 amino acids, and 4 amino acid enantiomers. Compared to the influx and efflux rates of most amino acids, similar ones were found for glucosamine, indicating that this amino sugar is released through peptidoglycan and chitin decomposition and serves as an important nitrogen source for soil microorganisms. d-Alanine and d-glutamic acid derived from peptidoglycan decomposition exhibited similar turnover rates as their l-enantiomers. This novel approach offers new strategies to advance our understanding of the production and transformation pathways of soil organic N metabolites, including the unknown contributions of peptidoglycan and chitin decomposition to soil organic N cycling.

  • Decoupling of microbial carbon, nitrogen, and phosphorus cycling in response to extreme temperature events

    Mooshammer M, Hofhansl F, Frank AH, Wanek W, Hämmerle I, Leitner S, Schnecker J, Wild B, Watzka M, Keiblinger KM, Zechmeister­‐Boltenstern S, Richter A
    2017 - Science Advances, 3: 13


    Predicted changes in the intensity and frequency of climate extremes urge a better mechanistic understanding of the
    stress response of microbially mediated carbon (C) and nutrient cycling processes. We analyzed the resistance and
    resilience of microbial C, nitrogen (N), and phosphorus (P) cycling processes and microbial community composition
    in decomposing plant litter to transient, but severe, temperature disturbances, namely, freeze-thaw and heat. Disturbances
    led temporarily to a more rapid cycling of C and N but caused a down-regulation of P cycling. In contrast to the
    fast recovery of the initially stimulated C and N processes, we found a slow recovery of P mineralization rates, which
    was not accompanied by significant changes in community composition. The functional and structural responses to
    the two distinct temperature disturbances were markedly similar, suggesting that direct negative physical effects and
    costs associated with the stress response were comparable. Moreover, the stress response of extracellular enzyme
    activities, but not that of intracellular microbial processes (for example, respiration or N mineralization), was
    dependent on the nutrient content of the resource through its effect on microbial physiology and community
    composition. Our laboratory study provides novel insights into the mechanisms of microbial functional stress responses
    that can serve as a basis for field studies and, in particular, illustrates the need for a closer integration of
    microbial C-N-P interactions into climate extremes research.

  • Increased temperature causes different carbon and nitrogen processing patterns in two common intertidal foraminifera (Ammonia tepida and Haynesina germanica)

    Wukovits J, Enge AJ, Wanek W, Watzka M, Heinz P
    2017 - Biogeosciences, 11: 2815-2829


    Benthic foraminifera are highly abundant heterotrophic protists in marine sediments, but future environmental changes will challenge the tolerance limits of intertidal species. Metabolic rates and physiological processes in foraminifera are strongly dependent on environmental temperatures. Temperature-related stress could therefore impact foraminiferal food source processing efficiency and might result in altered nutrient fluxes through the intertidal food web. In this study, we performed a laboratory feeding experiment on Ammonia tepida and Haynesina germanica, two dominant foraminiferal species of the German Wadden Sea/Friedrichskoog, to test the effect of temperature on phytodetritus retention. The specimens were fed with C-13 and N-15 labelled freeze-dried Dunaliella tertiolecta (green algae) at the start of the experiment and were incubated at 20, 25 and 30 degrees C respectively. Dual labelling was applied to observe potential temperature effects on the relation of phytodetrital carbon and nitrogen retention. Samples were taken over a period of 2 weeks. Foraminiferal cytoplasm was isotopically analysed to investigate differences in carbon and nitrogen uptake derived from the food source. Both species showed a positive response to the provided food source, but carbon uptake rates of A. tepida were 10-fold higher compared to those of H. germanica. Increased temperatures had a far stronger impact on the carbon uptake of H. germanica than on A. tepida. A distinct increase in the levels of phytodetrital-derived nitrogen (compared to more steady carbon levels) could be observed over the course of the experiment in both species. The results suggest that higher temperatures have a significant negative effect on the carbon exploitation of H. germanica. For A. tepida, higher carbon uptake rates and the enhanced tolerance range for higher temperatures could outline an advantage in warmer periods if the main food source consists of chlorophyte phytodetritus. These conditions are likely to impact nutrient fluxes in A. tepida/H. germanica associations.

  • Stable isotope signatures reflect dietary diversity in European forest moths

    Adams MO, Seifert CL, Lehner L, Truxa C, Wanek W, Fiedler K
    2016 - Frontiers in Zoology, 13: 1-10


    Background: Information on larval diet of many holometabolous insects remains incomplete. Carbon (C) and nitrogen (N) stable isotope analysis in adult wing tissue can provide an efficient tool to infer such trophic relationships. The present study examines whether moth feeding guild affiliations taken from literature are reflected in isotopic signatures. Results: Non-metric multidimensional scaling and permutational analysis of variance indicate that centroids of dietary groups differ significantly. In particular, species whose larvae feed on mosses or aquatic plants deviated from those that consumed vascular land plants. Moth δ15N signatures spanned a broader range, and were less dependent on species identity than δ13C values. Comparison between moth samples and ostensible food sources revealed heterogeneity in the lichenivorous guild, indicating only Lithosia quadra as an obligate lichen feeder. Among root-feeding Agrotis segetum, some specimens appear to have developed on crop plants in forest-adjacent farm land. Reed-feeding stem-borers may partially rely on intermediary trophic levels such as fungal or bacterial growth. Conclusion: Diagnostic partitioning of moth dietary guilds based on isotopic signatures alone could not be achieved, but hypotheses on trophic relationships based on often vague literature records could be assessed with high resolution. Hence, the approach is well suited for basic categorization of moths where diet is unknown or notoriously difficult to observe (i.e. Microlepidoptera, lichen-feeders). Keywords: δ13C, δ15N, Larval diet, Trophic position Abbreviations: C, Chemical symbol for carbon; IAEA-CH-6, Reference standard for 13C/12C ratios derived from sucrose and provided by the international atomic energy agency (IAEA); IAEA-CH-7, Reference standard for 13C/12C ratios derived from polyethylene and provided by the international atomic energy agency (IAEA); IAEA-N-1, Reference standard for 15N/ 14N ratios derived from ammonium sulfate and provided by the international atomic energy agency (IAEA); IAEA-N- 2, Reference standard for 15N/14N ratios derived from ammonium sulfate and provided by the international atomic energy agency (IAEA); IAEA-NO-3, Reference standard for 15N/14N ratios derived from potassium nitrate and provided by the international atomic energy agency (IAEA); MMDS, Metric multi-dimensional scaling; N, Chemical symbol for nitrogen; NMDS, Non-metric multi-dimensional scaling; SD, Standard deviation; TLE, Trophic level enrichment; δ 13C, Shift in the 13C/12C ratio of the sample relative to the reference standard (i.e. Pee Dee Belemnite); δ 15N, Shift in the 15N/14N ratio of the sample relative to the reference standard (i.e. atmospheric nitrogen)

  • Moss δ13C: Implications for subantarctic palaeohydrological reconstructions

    Bramley-Alves J, Wanek W, Robinson SA
    2016 - Palaeogeography, 453: 20-29


    Southern Ocean Islands, despite their equitable oceanic climates, have recently experienced a number of pronounced climate variations. Shifts in water availability in this region are of concern; however, methods of measuring water availability are currently inadequate. Recent advances using stable carbon isotopes (δ13C) in Antarctic mosses to record long-term variations in water availability suggest that this technique might be applicable in other locations where conditions are cold enough to produce meaningful moss growth for reconstructions. Verification of this technique at each new location is essential, however, due to disparity between species and climates. Here, variations in δ13CBULK with growth water availability were measured in three moss species on subantarctic Macquarie Island. We found these subantarctic mosses showed no difference in δ13CBULK signatures between growth water environments and displayed more negative δ13CBULK ranges than those from East Antarctica, suggesting that climatic differences override the microclimate signal. Despite significant differences in leaf cell morphology there was no variation in δ13CBULK between these subantarctic species. It may be that these species are unsuitable as biological proxies due to their growth form being less dense than the turf forming Antarctic species. This underlines the need to carryout preliminary research into moss carbon isotope fractionation for each new region, and for each species, where palaeohydrological reconstructions are planned – a step that is often not given appropriate consideration in palaeo-research.

  • Metabolism of mineral-sorbed organic matter and microbial lifestyles in fluvial ecosystems

    Hunter WR, Niederdorfer R, Gernand A, Veuger B, Prommer J, Mooshammer M, Wanek W, Battin TJ
    2016 - Geophysical Research Letters, 43: 1582-1588


    In fluvial ecosystems mineral erosion, carbon (C), and nitrogen (N) fluxes are linked via organomineral complexation, where dissolved organic molecules bind to mineral surfaces. Biofilms and suspended aggregates represent major aquatic microbial lifestyles whose relative importance changes predictably through fluvial networks. We tested how organomineral sorption affects aquatic microbial metabolism, using organomineral particles containing a mix of 13C, 15N-labeled amino acids. We traced 13C and 15N retention within biofilm and suspended aggregate biomass and its mineralization. Organomineral complexation restricted C and N retention within biofilms and aggregates and also their mineralization. This reduced the efficiency with which biofilms mineralize C and N by 30% and 6%. By contrast, organominerals reduced the C and N mineralization efficiency of suspended aggregates by 41% and 93%. Our findings show how organomineral complexation affects microbial C:N stoichiometry, potentially altering the biogeochemical fate of C and N within fluvial ecosystems.

  • Soil microbial carbon use efficiency and biomass turnover in a long-term fertilization experiment in a temperate grassland

    Spohn M, Pötsch EM, Eichhorst SA, Woebken D, Wanek W, Richter A
    2016 - Soil Biology and Biochemistry, 97: 168-175


    Soil microbial carbon use efficiency (CUE), defined as the ratio of organic C allocated to growth over organic C taken up, strongly affects soil carbon (C) cycling. Despite the importance of the microbial CUE for the terrestrial C cycle, very little is known about how it is affected by nutrient availability. Therefore, we studied microbial CUE and microbial biomass turnover time in soils of a long-term fertilization experiment in a temperate grassland comprising five treatments (control, PK, NK, NP, NPK). Microbial CUE and the turnover of microbial biomass were determined using a novel substrate-independent method based on incorporation of 18O from labeled water into microbial DNA. Microbial respiration was 28–37% smaller in all three N treatments (NK, NP, and NPK) compared to the control, whereas the PK treatment did not affect microbial respiration. N-fertilization decreased microbial C uptake, while the microbial growth rate was not affected. Microbial CUE ranged between 0.31 and 0.45, and was 1.3- to 1.4-fold higher in the N-fertilized soils than in the control. The turnover time ranged between 80 and 113 days and was not significantly affected by fertilization. Net primary production (NPP) and the abundance of legumes differed strongly across the treatments, and the fungal:bacterial ratio was very low in all treatments. Structural equation modeling revealed that microbial CUE was exclusively controlled by N fertilization and that neither the abundance of legumes (as a proxy for the quality of the organic matter inputs) nor NPP (as a proxy for C inputs) had an effect on microbial CUE. Our results show that N fertilization did not only decrease microbial respiration, but also microbial C uptake, indicating that less C was intracellularly processed in the N fertilized soils. The reason for reduced C uptake and increased CUE in the N-fertilization treatments is likely an inhibition of oxidative enzymes involved in the degradation of aromatic compounds by N in combination with a reduced energy requirement for microbial N acquisition in the fertilized soils. In conclusion, the study shows that N availability can control soil C cycling by affecting microbial CUE, while plant community-mediated changes in organic matter inputs and P and K availability played no important role for C partitioning of the microbial community in this temperate grassland.

  • Functional leaf traits of vascular epiphytes: vertical trends within the forest, intra- and interspecific trait variability, and taxonomic signals

    Petter G, Wagner K, Wanek W, Delago EJS, Zotz G, Cabral JS, Kreft H
    2016 - Functional Ecology, 30: 188-198



    1. Analysing functional traits along environmental gradients can improve our understanding of the mechanisms structuring plant communities. Within forests, vertical gradients in light intensity, temperature and humidity are often pronounced. Vascular epiphytes are particularly suitable for studying the influence of these vertical gradients on functional traits because they lack contact with the soil and thus individual plants are entirely exposed to different environmental conditions, from the dark and humid understorey to the sunny and dry outer canopy.
    2. In this study, we analysed multiple aspects of the trait-based ecology of vascular epiphytes: shifts in trait values with height above ground (as a proxy for vertical environmental gradients) at community and species level, the importance of intra- vs. interspecific trait variability, and trait differences among taxonomic groups. We assessed ten leaf traits for 1151 individuals belonging to 83 epiphyte species of all major taxonomic groups co-occurring in a Panamanian lowland forest.
    3. Community mean trait values of many leaf traits were strongly correlated with height and particularly specific leaf area and chlorophyll concentration showed nonlinear, negative trends.
    4. Intraspecific trait variability was pronounced and accounted for one-third of total observed trait variance. Intraspecific trait adjustments along the vertical gradient were common and seventy per cent of all species showed significant trait–height relationships. In addition, intraspecific trait variability was positively correlated with the vertical range occupied by species.
    5. We observed significant trait differences between major taxonomic groups (orchids, ferns, aroids, bromeliads). In ferns, for instance, leaf dry matter content was almost twofold higher than in the other taxonomic groups. This indicates that some leaf traits are taxonomically conserved.
    6. Our study demonstrates that vertical environmental gradients strongly influence functional traits of vascular epiphytes. In order to understand community composition along such gradients, it is central to study several aspects of trait-based ecology, including both community and intraspecific trends of multiple traits.
  • Microbial carbon use efficiency and biomass turnover times depending on soil depth - Implications for carbon cycling.

    Spohn M, Klaus K, Wanek W, Richter A
    2016 - Soil Biology and Biochemistry, 96: 74-81


    Processing of organic carbon (C) by soil microorganisms is a key process of terrestrial C cycling. For this reason we studied (i) microbial carbon use efficiency (CUE) defined as C allocated to growth over organic C taken up by the microbial community, and (ii) the turnover time of microbial biomass in a pasture and in two forest soils. We hypothesized that microbial CUE decreases in mineral soils with depth from the topsoil to the subsoil, while the turnover time of the microbial biomass increases due to energetic constrains. We determined microbial CUE and turnover of microbial biomass C using a novel substrate-independent method based on incorporation of 18O from labeled water into microbial DNA with concurrent measurements of basal respiration. Microorganisms showed decreasing C uptake rates with decreasing C contents in the deeper soil layers. In the forest soils, no adaptation of microbial CUE with soil depth took place, i.e., microbes in the forest topsoil used C at the same efficiency as microbes in the subsoil. However, in the pasture soil, microbial CUE decreased in the lower soil layers compared to the topsoil, indicating that microorganisms in the deeper soil layers allocated relatively more C to respiration. In the organic soil layer, microorganisms respired more per unit microbial biomass C than in the subsoil, but had a similar CUE despite the high C-to-nitrogen and C-to-phosphorus ratios of the litter layers. The turnover time of microbial biomass increased with soil depth in the two forest soils. Thus, in the forest soils, a lower microbial C uptake rate in the deeper soil layers was partially compensated by a longer turnover time of microbial biomass C. In conclusion, our findings emphasize that in addition to microbial CUE, the turnover time of the microbial biomass strongly affects soil C cycling.


    • Soil microbial carbon use efficiency
    • Growth efficiency
    • Organic matter decomposition;
    • Microbial metabolism
    • Stoichiometry
    • Microbial biomass carbon turnover
  • Little effects on soil organic matter chemistry of density fractions after seven years of forest soil warming

    Schnecker J, Borken W, Schindlbacher A, Wanek W
    2016 - Soil Biology and Biochemistry, 103: 300-307


    Rising temperatures enhance microbial decomposition of soil organic matter (SOM) and thereby increase the soil CO2 efflux. Elevated decomposition rates might differently affect distinct SOM pools, depending on their stability and accessibility. Soil fractions derived from density fractionation have been suggested to represent SOM pools with different turnover times and stability against microbial decomposition.

    To investigate the effect of soil warming on functionally different soil organic matter pools, we here investigated the chemical and isotopic composition of bulk soil and three density fractions (free particulate organic matter, fPOM; occluded particulate organic matter, oPOM; and mineral associated organic matter, MaOM) of a C-rich soil from a long-term warming experiment in a spruce forest in the Austrian Alps. At the time of sampling, the soil in this experiment had been warmed during the snow-free period for seven consecutive years. During that time no thermal adaptation of the microbial community could be identified and CO2 release from the soil continued to be elevated by the warming treatment. Our results, which included organic carbon content, total nitrogen content, δ13C, Δ14C, δ15N and the chemical composition, identified by pyrolysis-GC/MS, showed no significant differences in bulk soil between warming treatment and control. Surprisingly, the differences in the three density fractions were mostly small and the direction of warming induced change was variable with fraction and soil depth. Warming led to reduced N content in topsoil oPOM and subsoil fPOM and to reduced relative abundance of N-bearing compounds in subsoil MaOM. Further, warming increased the δ13C of MaOM at both sampling depths, reduced the relative abundance of carbohydrates while it increased the relative abundance of lignins in subsoil oPOM. As the size of the functionally different SOM pools did not significantly change, we assume that the few and small modifications in SOM chemistry result from an interplay of enhanced microbial decomposition of SOM and increased root litter input in the warmed plots. Overall, stable functional SOM pool sizes indicate that soil warming had similarly affected easily decomposable and stabilized SOM of this C-rich forest soil.

  • Microbial decomposition of 13C- labeled phytosiderophores in the rhizosphere of wheat: Mineralization dynamics and key microbial groups involved

    Oburger E, Gruber B, Wanek W, Watzinger A, Stanetty C, Schindlegger Y, Hann S., Schenkeveld WDC, Kraemer SM, Puschenteiter M
    2016 - Soil Biology and Biochemistry, 98: 196-207


    Being low molecular weight carbon (LMW-C) compounds, phytosiderophores (PS) released by strategy II plants are highly susceptible to microbial decomposition. However, to date very little is known about the fate of PS in soil. Using in-house synthesized 13C4-2′-deoxymugineic acid (DMA), the main PS released by wheat, we investigated DMA mineralization dynamics, including microbial incorporation into phospholipid fatty acids (PLFA), in the wheat rhizosphere and bulk soil of two alkaline and one acidic soil. Half-lives of the intact DMA molecule (3–8 h) as well as of DMA-derived C-compounds (8–38 days) were in the same order of magnitude as those published for other LMW-C compounds like sugars, amino acids and organic acids. Combining mineralization with PLFA data showed that between 40 and 65% of the added DMA was either respired or incorporated into soil microbial biomass after 24 h, with the largest part of total incorporated DMA-13C being recovered in gram negative bacteria. Considering root growth dynamics and that PS are mainly exuded from root tips, the significantly slower mineralization of DMA in bulk soil is of high ecological importance to enhance the Fe scavenging efficiency of PS released into the soil.

  • Carbon and Nitrogen Uptake of Calcareous Benthic Foraminifera along a Depth-Related Oxygen Gradient in the OMZ of the Arabian Sea

    Enge AJ, Wukovits J, Wanek W, Watzka M, Witte UFM, Hunter WR, Heinz P
    2016 - Frontiers in microbiology, 7: 71


    Foraminifera are an important faunal element of the benthos in oxygen-depleted settings such as Oxygen Minimum Zones (OMZs) where they can play a relevant role in the processing of phytodetritus. We investigated the uptake of phytodetritus (labeled with 13C and 15N) by calcareous foraminifera in the 0–1 cm sediment horizon under different oxygen concentrations within the OMZ in the eastern Arabian Sea. The in situ tracer experiments were carried out along a depth transect on the Indian margin over a period of 4 to 10 days. The uptake of phytodetrital carbon within 4 days by all investigated species shows that phytodetritus is a relevant food source for foraminifera in OMZ sediments. The decrease of total carbon uptake from 540 to 1100 m suggests a higher demand for carbon by species in the low-oxygen core region of the OMZ or less food competition with macrofauna. Especially Uvigerinids showed high uptake of phytodetrital carbon at the lowest oxygenated site. Variation in the ratio of phytodetrital carbon to nitrogen between species and sites indicates that foraminiferal carbon and nitrogen use can be decoupled and different nutritional demands are found between species. Lower ratio of phytodetrital carbon and nitrogen at 540 m could hint for greater demand or storage of food-based nitrogen, ingestion, or hosting of bacteria under almost anoxic conditions. Shifts in the foraminiferal assemblage structure (controlled by oxygen or food availability) and in the presence of other benthic organisms are likely to account for observed changes in the processing of phytodetritus in the different OMZ habitats. Foraminifera dominate the short-term processing of phytodetritus in the OMZ core but are less important in the lower OMZ boundary region of the Indian margin as biological interactions and species distribution of foraminifera change with depth and oxygen levels.

  • Biological nitrogen fixation and biomass production stability in alfalfa (Medicago sativa L.) genotypes under organic management conditions

    Moghaddam A, Raza A, Vollmann, J, Ardakani MR, Wanek W, Gollner G, Friedel JK
    2015 - Biological Agriculture & Horticulture, 31: 177-192


    Assessments of the stability as well as the performance of plant genotypes across diverse environmental conditions is important for plant breeders as a tool for selecting superior cultivars for the target environments. Alfalfa is the best known fodder crop with a high ability for biological nitrogen fixation (BNF) and high drought tolerance, and it is well-known as an important component of organic farming systems especially in the dry, Pannonian region of east Austria. In a 2-year experiment (2007-2008), 18 alfalfa genotypes from different geographical origins were evaluated under irrigated and rainfed conditions in order to recognize high performance and stable genotypes based on biomass production and BNF in organically managed fields at the University of Natural Resources and Life Sciences, Vienna, Austria. The analysis of variance showed significant differences for the main factors namely year, location, genotype and their interactions in the studied traits. With regard to mean comparisons and stability analysis for shoot dry matter, total biomass yield and BNF, the cultivar Sitel was the best performing genotype followed by PlatoZS, Fix232, Vlasta and Gharghologh. Although additive main effects and multiplicative interaction analysis was found to be more informative in describing the adaptive response of the genotypes, the superiority measure P-i was the best stability parameter to select high yielding and stable genotypes, based on its simplicity of calculation and correlation with crop performance in this study.

  • The application of ecological stoichiometry to plant-microbial-soil organic matter transformations

    Zechmeister-Boltenstern S, Keiblinger KM, Mooshammer M, Peñuelas J, Richter A, Sardans J, Wanek W
    2015 - Ecological Monographs, 85: 135-155


    Elemental stoichiometry constitutes an inherent link between biogeochemistry and the structure and processes within food webs, and thus is at the core of ecosystem functioning. Stoichiometry allows for spanning different levels of biological organization, from cellular metabolism to ecosystem structure and nutrient cycling, and is therefore particularly useful for establishing links between different ecosystem compartments. We review elemental carbon : nitrogen : phosphorus (C:N:P) ratios in terrestrial ecosystems (from vegetation, leaf litter, woody debris, and dead roots, to soil microbes and organic matter). While the stoichiometry of the plant, litter, and soil compartments of ecosystems is well understood, heterotrophic microbial communities, which dominate the soil food web and drive nutrient cycling, have received increasing interest in recent years. This review highlights the effects of resource stoichiometry on soil microorganisms and decomposition, specifically on the structure and function of heterotrophic microbial communities and suggests several general patterns. First, latitudinal gradients of soil and litter stoichiometry are reflected in microbial community structure and function. Second, resource stoichiometry may cause changes in microbial interactions and community dynamics that lead to feedbacks in nutrient availability. Third, global change alters the C:N, C:P, and N:P ratios of primary producers, with repercussions for microbial decomposer communities and critical ecosystem services such as soil fertility. We argue that ecological stoichiometry provides a framework to analyze and predict such global change effects at various scales.

  • Contribution of carbonate weathering to the CO2 efflux from temperate forest soils

    Schindlbacher A, Borken W, Djukic I, Brandstätter C, Spötl C, Wanek W
    2015 - Biogeochemistry, 124: 273-290


    Temperate forests provide favorable conditions for carbonate bedrock weathering as the soil CO2 partial pressure is high and soil water is regularly available. As a result of weathering, abiotic CO2 can be released and contribute to the soil CO2 efflux. We used the distinct isotopic signature of the abiotic CO2 to estimate its contribution to the total soil CO2 efflux. Soil cores were sampled from forests on dolomite and limestone and were incubated under the exclusion of atmospheric CO2. Efflux and isotopic signatures of CO2 were repeatedly measured of cores containing the whole mineral soil and bedrock material (heterotrophic respiration + CO2 from weathering) and of cores containing only the mineral top-soil layer (A-horizon; heterotrophic respiration). An aliquot of the cores were let dry out during incubation to assess effects of soil moisture. Although the delta C-13 values of the CO2 efflux from the dolomite soil cores were within a narrow range (A-horizon -26.2 +/- A 0.1 aEuro degrees; whole soil profile wet -25.8 +/- A 0.1 aEuro degrees; whole soil profile dry -25.5 +/- A 0.1 aEuro degrees) the CO2 efflux from the separated A-horizons was significantly depleted in C-13 when compared to the whole soil profiles (p = 0.015). The abiotic contribution to the total CO2 efflux from the dolomite soil cores was 2.0 +/- A 0.5 % under wet and 3.4 +/- A 0.5 % under dry conditions. No abiotic CO2 efflux was traceable from the limestone soil cores. An overall low contribution of CO2 from weathering was affirmed by the amount and C-13 signature of the leached dissolved inorganic carbon (DIC) and the radiocarbon signature of the soil CO2 efflux in the field. Together, our data point towards no more than 1-2 % contribution of abiotic CO2 to the growing season soil CO2 efflux in the field.

  • Landscape-Scale Controls on Aboveground Forest Carbon Stocks on the Osa Peninsula, Costa Rica

    Taylor P, Asner G, Dahlin K, Anderson C, Knapp D, Martin R, Mascaro J, Chazdon R, Cole R, Wanek W, Hofhansl F, Vilchez-Alvaeado B, Townsend A
    2015 - PLoS One, 10: in press


    Tropical forests store large amounts of carbon in tree biomass, although the environmental controls on forest carbon stocks remain poorly resolved. Emerging airborne remote sensing techniques offer a powerful approach to understand how aboveground carbon density (ACD) varies across tropical landscapes. In this study, we evaluate the accuracy of the Carnegie Airborne Observatory (CAO) Light Detection and Ranging (LiDAR) system to detect top-of-canopy tree height (TCH) and ACD across the Osa Peninsula, Costa Rica. LiDAR and field-estimated TCH and ACD were highly correlated across a wide range of forest ages and types. Top-of-canopy height (TCH) reached 67 m, and ACD surpassed 225 Mg C ha-1, indicating both that airborne CAO LiDAR-based estimates of ACD are accurate in tall, high-biomass forests and that the Osa Peninsula harbors some of the most carbon-rich forests in the Neotropics. We also examined the relative influence of lithologic, topoedaphic and climatic factors on regional patterns in ACD, which are known to influence ACD by regulating forest productivity and turnover. Analyses revealed a spatially nested set of factors controlling ACD patterns, with geologic variation explaining up to 16% of the mapped ACD variation at the regional scale, while local variation in topographic slope explained an additional 18%. Lithologic and topoedaphic factors also explained more ACD variation at 30-m than at 100-m spatial resolution, suggesting that environmental filtering depends on the spatial scale of terrain variation. Our result indicate that patterns in ACD are partially controlled by spatial variation in geologic history and geomorphic processes underpinning topographic diversity across landscapes. ACD also exhibited spatial autocorrelation, which may reflect biological processes that influence ACD, such as the assembly of species or phenotypes across the landscape, but additional research is needed to resolve how abiotic and biotic factors contribute to ACD variation across high biomass, high diversity tropical landscapes.

  • Microbial physiology and soil CO2 efflux after 9 years of soil warming in a temperate forest - no indications for thermal adaptations

    Schindlbacher A, Schnecker J, Takriti M, Borken W, Wanek W
    2015 - Global Change Biology, 21: 4265-4277


    Thermal adaptations of soil microorganisms could mitigate or facilitate global warming effects on soil organic matter (SOM) decomposition and soil CO2 efflux. We incubated soil from warmed and control subplots of a forest soil warming experiment to assess whether 9 years of soil warming affected the rates and the temperature sensitivity of the soil CO2 efflux, extracellular enzyme activities, microbial efficiency, and gross N mineralization. Mineral soil (0-10 cm depth) was incubated at temperatures ranging from 3 to 23 °C. No adaptations to long-term warming were observed regarding the heterotrophic soil CO2 efflux (R10 warmed: 2.31 ± 0.15 μmol m(-2) s(-1) , control: 2.34 ± 0.29 μmol m(-2) s(-1) ; Q10 warmed: 2.45 ± 0.06, control: 2.45 ± 0.04). Potential enzyme activities increased with incubation temperature, but the temperature sensitivity of the enzymes did not differ between the warmed and the control soils. The ratio of C : N acquiring enzyme activities was significantly higher in the warmed soil. Microbial biomass-specific respiration rates increased with incubation temperature, but the rates and the temperature sensitivity (Q10 warmed: 2.54 ± 0.23, control 2.75 ± 0.17) did not differ between warmed and control soils. Microbial substrate use efficiency (SUE) declined with increasing incubation temperature in both, warmed and control, soils. SUE and its temperature sensitivity (Q10 warmed: 0.84 ± 0.03, control: 0.88 ± 0.01) did not differ between warmed and control soils either. Gross N mineralization was invariant to incubation temperature and was not affected by long-term soil warming. Our results indicate that thermal adaptations of the microbial decomposer community are unlikely to occur in C-rich calcareous temperate forest soils. © 2015 The Authors. Global Change Biology published by John Wiley & Sons Ltd.

  • Convergence of soil nitrogen isotopes across global climate gradients

    Craine JM, Elmore AJ, Wang L, Augusto L, Baisden WT, Brookshire EN, Cramer MD, Hasselquist NJ, Hobbie EA, Kahmen A; Koba K, Kranabetter JM, Mack MC, Marin-Spiotta E, Mayor JR, McLauchlan KK, Michelsen A, Nardoto GB, Oliveira RS, Perakis SS, Peri PL, Quesada CA, Richter A, Schipper LA, Stevenson BA, Turner BL, Viani RA, Wanek W, Zeller B
    2015 - Scientific Reports, 5: 8


    Quantifying global patterns of terrestrial nitrogen (N) cycling is central to predicting future patterns of primary productivity, carbon sequestration, nutrient fluxes to aquatic systems, and climate forcing. With limited direct measures of soil N cycling at the global scale, syntheses of the (15)N:(14)N ratio of soil organic matter across climate gradients provide key insights into understanding global patterns of N cycling. In synthesizing data from over 6000 soil samples, we show strong global relationships among soil N isotopes, mean annual temperature (MAT), mean annual precipitation (MAP), and the concentrations of organic carbon and clay in soil. In both hot ecosystems and dry ecosystems, soil organic matter was more enriched in (15)N than in corresponding cold ecosystems or wet ecosystems. Below a MAT of 9.8°C, soil δ(15)N was invariant with MAT. At the global scale, soil organic C concentrations also declined with increasing MAT and decreasing MAP. After standardizing for variation among mineral soils in soil C and clay concentrations, soil δ(15)N showed no consistent trends across global climate and latitudinal gradients. Our analyses could place new constraints on interpretations of patterns of ecosystem N cycling and global budgets of gaseous N loss.

  • Moss δ(13) C: an accurate proxy for past water environments in polar regions

    Bramley-Alves J, Wanek W, French K, Robinson SA
    2015 - Global Change Biology, 21: 2454-2464


    Increased aridity is of global concern. Polar regions provide an opportunity to monitor changes in bioavailable water free of local anthropogenic influences. However, sophisticated proxy measures are needed. We explored the possibility of using stable carbon isotopes in segments of moss as a fine-scale proxy for past bioavailable water. Variation in δ(13) C with water availability was measured in three species across three peninsulas in the Windmill Islands, East Antarctica and verified using controlled chamber experiments. The δ(13) C from Antarctic mosses accurately recorded long-term variations in water availability in the field, regardless of location, but significant disparities in δ(13) C between species indicated some make more sensitive proxies. δ(13) CSUGAR derived from living tissues can change significantly within the span of an Antarctic season (5 weeks) in chambers, but under field conditions, slow growth means that this technique likely represents multiple seasons. δ(13) CCELLULOSE provides a precise and direct proxy for bioavailable water, allowing reconstructions for coastal Antarctica and potentially other cold regions over past centuries. © 2014 John Wiley & Sons Ltd.

  • Host tree phenology affects vascular epiphytes at the physiological, demographic and community level

    Heinzmann HJR, Beyschlag J, Hofhansl F, Wanek W, Zotz G
    2015 - AoB Plants, 7: 16


    he processes that govern diverse tropical plant communities have rarely been studied in life forms other than trees. Structurally dependent vascular epiphytes, a major part of tropical biodiversity, grow in a three-dimensional matrix defined by their hosts, but trees differ in their architecture, bark structure/chemistry and leaf phenology. We hypothesized that the resulting seasonal differences in microclimatic conditions in evergreen vs. deciduous trees would affect epiphytes at different levels, from organ physiology to community structure. We studied the influence of tree leaf phenology on vascular epiphytes on the Island of Barro Colorado, Panama. Five tree species were selected, which were deciduous, semi-deciduous or evergreen. The crowns of drought-deciduous trees, characterized by sunnier and drier microclimates, hosted fewer individuals and less diverse epiphyte assemblages. Differences were also observed at a functional level, e.g. epiphyte assemblages in deciduous trees had larger proportions of Crassulacean acid metabolism species and individuals. At the population level a drier microclimate was associated with lower individual growth and survival in a xerophytic fern. Some species also showed, as expected, lower specific leaf area and higher δ(13)C values when growing in deciduous trees compared with evergreen trees. As hypothesized, host tree leaf phenology influences vascular epiphytes at different levels. Our results suggest a cascading effect of tree composition and associated differences in tree phenology on the diversity and functioning of epiphyte communities in tropical lowland forests. Published by Oxford University Press on behalf of the Annals of Botany Company.

  • New insights into mechanisms driving carbon allocation in tropical forests

    Hofhansl F, Schnecker J, Singer G, Wanek W
    2015 - New Phytologist, 205: 137-146


    The proportion of carbon allocated to wood production is an important determinant of the carbon sink strength of global forest ecosystems. Understanding the mechanisms controlling wood production and its responses to environmental drivers is essential for parameterization of global vegetation models and to accurately predict future responses of tropical forests in terms of carbon sequestration. Here, we synthesize data from 105 pantropical old-growth rainforests to investigate environmental controls on the partitioning of net primary production to wood production (%WP) using structural equation modeling. Our results reveal that %WP is governed by two independent pathways of direct and indirect environmental controls. While temperature and soil phosphorus availability indirectly affected %WP via increasing productivity, precipitation and dry season length both directly increased %WP via tradeoffs along the plant economics spectrum. We provide new insights into the mechanisms driving %WP, allowing us to conclude that projected climate change could enhance %WP in less productive tropical forests, thus increasing carbon sequestration in montane forests, but adversely affecting lowland forests. © 2014 The Authors. New Phytologist © 2014 New Phytologist Trust.

  • Sensitivity of tropical forest aboveground productivity to climate anomalies in SW Costa Rica

    Hofhansl F, Kobler J, Ofner J, Drage S, Pölz EM, Wanek W
    2014 - Global Biogeochemical Cycles, 28: 1437-1454


    The productivity of tropical forests is driven by climate (precipitation, temperature, and light) and soil fertility (geology and topography). While large-scale drivers of tropical productivity are well established, knowledge on the sensitivity of tropical lowland net primary production to climate anomalies remains scarce. We here analyze seven consecutive years of monthly recorded tropical forest aboveground net primary production (ANPP) in response to a recent El Nino-Southern Oscillation (ENSO) anomaly. The ENSO transition period resulted in increased temperatures and decreased precipitation during the El Nino dry period, causing a decrease in ANPP. However, the subsequent La Nina wet period caused strong increases in ANPP such that drought-induced reductions were overcompensated. Most strikingly, the climatic controls differed between canopy production (CP) and wood production (WP). Whereas CP showed strong seasonal variation but was not affected by ENSO, WP decreased significantly in response to a 3 degrees C increase in annual maximum temperatures during the El Nino period but subsequently recovered to above predrought levels during the La Nina period. Moreover, the climate sensitivity of tropical forest ANPP components was affected by local topography (water availability) and disturbance history (species composition). Our results suggest that projected increases in temperature and dry season length could impact tropical carbon sequestration by shifting ANPP partitioning toward decreased WP, thus decreasing the carbon storage of highly productive lowland forests. We conclude that the impact of climate anomalies on tropical forest productivity is strongly related to local site characteristics and will therefore likely prevent uniform responses of tropical lowland forests to projected global changes.

  • Nutrient limitation of alpine plants: Implications from leaf N : P stoichiometry and leaf delta N-15

    Xu X, Wanek W, Zhou C, Richter A, Song M, Cao G, Ouyang H, Kuzyakov Y
    2014 - Journal of Plant Nutrition and Soil Science, 177: 178-387


    Nitrogen (N) deposition can affect grassland ecosystems by altering biomass production, plant species composition and abundance. Therefore, a better understanding of the response of dominant plant species to N input is a prerequisite for accurate prediction of future changes and interactions within plant communities. We evaluated the response of seven dominant plant species on the Tibetan Plateau to N input at two levels: individual species and plant functional group. This was achieved by assessing leaf N : P stoichiometry, leaf delta N-15 and biomass production for the plant functional groups. Seven dominant plant species-three legumes, two forbs, one grass, one sedge-were analyzed for N, P, and delta N-15 2 years after fertilization with one of the three N forms: NO3-, NH4+, or NH4NO3 at four application rates (0, 7.5, 30, and 150 kg N ha(-1) y(-1)). On the basis of biomass production and leaf N : P ratios, we concluded that grasses were limited by available N or co-limited by available P. Unlike for grasses, leaf N : P and biomass production were not suitable indicators of N limitation for legumes and forbs in alpine meadows. The poor performance of legumes under high N fertilization was mainly due to strong competition with grasses. The total above-ground biomass was not increased by N fertilization. However, species composition shifted to more productive grasses. A significant negative correlation between leaf N : P and leaf delta N-15 indicated that the two forbs Gentiana straminea and Saussurea superba switched from N deficiency to P limitation (e. g., N excess) due to N fertilization. These findings imply that alpine meadows will be more dominated by grasses under increased atmospheric N deposition.

  • Thaumarchaeal ammonium oxidation and evidence for a nitrogen cycle in a subsurface radioactive thermal spring in the Austrian Central Alps

    Gerbl FW, Weidler GW, Wanek W, Erhardt A, Stan-Lotter H
    2014 - Frontiers in microbiology, 5: 17


    Previous studies had suggested the presence of ammonium oxidizing Thaumarchaeota as well as nitrite oxidizing Bacteria in the subsurface spring called Franz Josef Quelle (FJQ), a slightly radioactive thermal mineral spring with a temperature of 43.6-47 degrees C near the alpine village of Bad Gastein, Austria. The microbiological consortium of the FJQ was investigated for its utilization of nitrogen compounds and the putative presence of a subsurface nitrogen cycle. Microcosm experiments made with samples from the spring water, containing planktonic microorganisms, or from biofilms, were used in this study. Three slightly different media, enriched with vitamins and trace elements, and two incubation temperatures (30 and 40 degrees C, respectively) were employed. Under aerobic conditions, high rates of conversion of ammonium to nitrite, as well as nitrite to nitrate were measured. Under oxygen-limited conditions nitrate was converted to gaseous compounds. Stable isotope probing with (NH4Cl)-N-15 or ((NH4)-N-15)(2)SO(4)as sole energy sources revealed incorporation of N-15 into community DNA. Genomic DNA as well as RNA were extracted from all microcosms. The following genes or fragments of genes were successfully amplified, cloned and sequenced by standard PCR from DNA extracts: Ammonia monooxygenase subunit A (amoA), nitrite oxidoreductase subunits A and B (nxrA and nxrB), nitrate reductase (narG), nitrite reductase (nirS), nitric oxide reductases (cnorB and qnorB), nitrous oxide reductase (nosZ). Reverse transcription of extracted total RNA and real-time PCR suggested the expression of each of those genes. Nitrogen fixation (as probed with nifH and nifD) was not detected. However, a geological origin of NH4+ in the water of the FJQ cannot be excluded, considering the silicate, granite and gneiss containing environment. The data suggested the operation of a nitrogen cycle in the subsurface environment of the FJQ.

  • Assessing the effect of lucerne utilization systems in the Pannonian region of Austria

    Raza A, Bodner G, Moghaddan A, Ardakani MR, Loiskandl W, Himmelbauer M, Gollner G, Wanek W, Friedel JK
    2014 - Archives in Agronomy and Soil Science, 60: 297-311


    Conservation of water using mulches is a viable option under semiarid conditions for enhancing water use efficiency. Effect of mulches varies among years and with the amount and timing of mulching. Lucerne is a key crop for organic farming systems under semiarid conditions in Austria. Effect of mulching with lucerne has not been thoroughly investigated. Field experiments were conducted to assess the effect of lucerne utilization system (nonmulch versus mulch) on its shoot and root dry matter yield, biological nitrogen fixation and water use efficiency. Experiments were laid out in randomized complete block design with four replicates at the experimental farm of University of Natural Resources and Life Sciences, Vienna, Austria, during 2007-2008. Mulching was effective in lowering soil temperature by 1-6 degrees C in the top 5 cm of soil. Utilization systems did not significantly affect the other studied parameters (P < 0.05). Lucerne shoot and root dry matter yield, biological nitrogen fixation, and water use efficiency were greater in 2008 than in 2007. Effect of lucerne utilization systems on soil properties needs to be investigated over long-term studies to verify results of this 2-year study.

  • No evidence of aquatic priming effects in hyporheic zone microcosms

    Bengtson M, Wagner K, Burns NR, Herberg ER, Wanek W, Kaplan LA, Battin TJ
    2014 - Scientific Reports, 4: 6


    The priming effect refers to quantitative changes in microbial decomposition of recalcitrant organic matter upon addition of labile organic matter and is a phenomenon that mainly has been reported and debated in soil science. Recently, priming effects have been indicated in aquatic ecosystems and have received attention due to the potential significance for ecosystem carbon budgets. Headwater stream biofilms, which are important degraders of both allochthonous, presumably recalcitrant, organic matter and labile autochthonous organic matter, may be sites where priming effects are important in aquatic environments. We have experimentally tested for priming effects in stream biofilms within microcosms mimicking the stream hyporheic zone. A (13)C labeled model allochthonous carbon source was used in combination with different carbon sources simulating autochthonous inputs. We did not detect changes in respiration, removal or incorporation of allochthonous organic matter in response to autochthonous treatments, thus not supporting the occurrence of priming effects under the experimental conditions. This study is the first to address priming effects in the hyporheic zone, and one of very few studies quantitatively assessing aquatic priming effects. The results contrast with existing studies, which highlights the need for quantitative approaches to determine the importance of priming effects in aquatic environments.

  • Adjustment of microbial nitrogen use efficiency to carbon:nitrogen imbalances regulates soil nitrogen cycling

    Mooshammer M, Wanek W, Hämmerle I, Fuchslueger L, Hofhansl F, Knoltsch A, Schnecker J, Takriti M, Watzka M, Wild B, Keiblinger KM, Zechmeister-Boltenstern S, Richter A
    2014 - Nature Communications, 5: 3694


    Microbial nitrogen use efficiency (NUE) describes the partitioning of organic N taken up between growth and the release of inorganic N to the environment (that is, N mineralization), and is thus central to our understanding of N cycling. Here we report empirical evidence that microbial decomposer communities in soil and plant litter regulate their NUE. We find that microbes retain most immobilized organic N (high NUE), when they are N limited, resulting in low N mineralization. However, when the metabolic control of microbial decomposers switches from N to C limitation, they release an increasing fraction of organic N as ammonium (low NUE). We conclude that the regulation of NUE is an essential strategy of microbial communities to cope with resource imbalances, independent of the regulation of microbial carbon use efficiency, with significant effects on terrestrial N cycling.

  • The relationship between N isotopic fractionation within soybean and N2 fixation during soybean development

    Schweiger P, Hofer M, Vollmann J, Wanek W
    2014 - Physiologia Plantarum, 152: 546-557


    The contribution of N(2) fixation to overall soybean N uptake has most commonly been quantified by N isotope-based methods, which rely on isotopic differences in plant N between legumes and non-fixing reference plants. The choice of non-fixing reference plants is critical for the accuracy of isotope-based methods, and mismatched reference plants remain a potential source of error. Accurate estimates of soybean N(2) fixation also require information on N isotopic fractionation within soybean. On the basis of a previous observation of a close correlation between an expression of N fractionation within soybean and the proportion of plant N derived from atmosphere (%Ndfa) determined by (15) N natural abundance, this field study aimed at assessing the relationship between various expressions describing intraplant (15) N or N partitioning and %Ndfa during soybean development. Starting from a late vegetative stage until beginning senescence, the N content and N isotopic composition of shoots, roots and nodules of nodulated and non-nodulated soybeans was determined at eight different developmental stages. Regression analysis showed that %Ndfa most closely correlated with the difference in the N isotopic composition of shoot N minus that of root including nodule N, and that this relationship was similar to that obtained in a previous multi-site field study. We therefore consider this expression to hold promise as a means of quantifying %Ndfa independent of a reference plant, which would avoid some of the external sources of error introduced by the use of reference plants in determining %Ndfa. © 2014 Scandinavian Plant Physiology Society.

  • Stoichiometric imbalances between terrestrial decomposer communities and their resources: mechanisms and implications of microbial adaptations to their resources

    Mooshammer M, Wanek W, Zechmeister-Boltenstern S, Richter A
    2014 - Frontiers in microbiology, 5: 1-10


    Terrestrial microbial decomposer communities thrive on a wide range of organic matter types that rarely ever meet their elemental demands. In this review we synthesize the current state-of-the-art of microbial adaptations to resource stoichiometry, in order to gain a deeper understanding of the interactions between heterotrophic microbial communities and their chemical environment. The stoichiometric imbalance between microbial communities and their organic substrates generally decreases from wood to leaf litter and further to topsoil and subsoil organic matter. Microbial communities can respond to these imbalances in four ways: first, they adapt their biomass composition toward their resource in a non-homeostatic behavior. Such changes are, however, only moderate, and occur mainly because of changes in microbial community structure and less so due to cellular storage of elements in excess. Second, microbial communities can mobilize resources that meet their elemental demand by producing specific extracellular enzymes, which, in turn, is restricted by the C and N requirement for enzyme production itself. Third, microbes can regulate their element use efficiencies (ratio of element invested in growth over total element uptake), such that they release elements in excess depending on their demand (e.g., respiration and N mineralization). Fourth, diazotrophic bacteria and saprotrophic fungi may trigger the input of external N and P to decomposer communities. Theoretical considerations show that adjustments in element use efficiencies may be the most important mechanism by which microbes regulate their biomass stoichiometry. This review summarizes different views on how microbes cope with imbalanced supply of C, N and P, thereby providing a framework for integrating and linking microbial adaptation to resource imbalances to ecosystem scale fluxes across scales and ecosystems.

  • Biochar decelerates soil organic nitrogen cycling but stimulates soil nitrification in a temperate arable field trial

    Prommer J, Wanek W, Hofhansl F, Trojan D, Offre P, Urich T, Schleper C, Sassmann S, Kitzler B, Soja G, Hood-Nowotny RC
    2014 - PLoS One, 9: in press


    Biochar production and subsequent soil incorporation could provide carbon farming solutions to global climate change and escalating food demand. There is evidence that biochar amendment causes fundamental changes in soil nutrient cycles, often resulting in marked increases in crop production, particularly in acidic and in infertile soils with low soil organic matter contents, although comparable outcomes in temperate soils are variable. We offer insight into the mechanisms underlying these findings by focusing attention on the soil nitrogen (N) cycle, specifically on hitherto unmeasured processes of organic N cycling in arable soils. We here investigated the impacts of biochar addition on soil organic and inorganic N pools and on gross transformation rates of both pools in a biochar field trial on arable land (Chernozem) in Traismauer, Lower Austria. We found that biochar increased total soil organic carbon but decreased the extractable organic C pool and soil nitrate. While gross rates of organic N transformation processes were reduced by 50-80%, gross N mineralization of organic N was not affected. In contrast, biochar promoted soil ammonia-oxidizer populations (bacterial and archaeal nitrifiers) and accelerated gross nitrification rates more than two-fold. Our findings indicate a de-coupling of the soil organic and inorganic N cycles, with a build-up of organic N, and deceleration of inorganic N release from this pool. The results therefore suggest that addition of inorganic fertilizer-N in combination with biochar could compensate for the reduction in organic N mineralization, with plants and microbes drawing on fertilizer-N for growth, in turn fuelling the belowground build-up of organic N. We conclude that combined addition of biochar with fertilizer-N may increase soil organic N in turn enhancing soil carbon sequestration and thereby could play a fundamental role in future soil management strategies.

  • Aerobic nitrous oxide production through N-nitrosating hybrid formation in ammonia-oxidizing archaea

    Stieglmeier M, Mooshammer M, Kitzler B, Wanek W, Zechmeister-Boltenstern S, Richter A, Schleper C
    2014 - ISME Journal, 8: 1135-1146


    Soil emissions are largely responsible for the increase of the potent greenhouse gas nitrous oxide (N2O) in the atmosphere and are generally attributed to the activity of nitrifying and denitrifying bacteria. However, the contribution of the recently discovered ammonia-oxidizing archaea (AOA) to N2O production from soil is unclear as is the mechanism by which they produce it. Here we investigate the potential of Nitrososphaera viennensis, the first pure culture of AOA from soil, to produce N2O and compare its activity with that of a marine AOA and an ammonia-oxidizing bacterium (AOB) from soil. N. viennensis produced N2O at a maximum yield of 0.09% N2O per molecule of nitrite under oxic growth conditions. N2O production rates of 4.6±0.6 amol N2O cell(-1) h(-1) and nitrification rates of 2.6±0.5 fmol NO2(-) cell(-1) h(-1) were in the same range as those of the AOB Nitrosospira multiformis and the marine AOA Nitrosopumilus maritimus grown under comparable conditions. In contrast to AOB, however, N2O production of the two archaeal strains did not increase when the oxygen concentration was reduced, suggesting that they are not capable of denitrification. In (15)N-labeling experiments we provide evidence that both ammonium and nitrite contribute equally via hybrid N2O formation to the N2O produced by N. viennensis under all conditions tested. Our results suggest that archaea may contribute to N2O production in terrestrial ecosystems, however, they are not capable of nitrifier-denitrification and thus do not produce increasing amounts of the greenhouse gas when oxygen becomes limiting.

  • Carbon isotope discrimination and water use efficiency relationships of alfalfa genotypes under irrigated and rain-­‐fed organic farming

    Moghaddam A, Raza A, Vollmann J, Ardakani MR, Wanek W, Gollner G, Friedel JK
    2013 - European Journal of Agronomy, 50: 82-89


    Carbon isotope discrimination (Delta) has been proposed as a method for evaluating water use efficiency (WUE) in C-3 plants and as a precise technique for screening plants with higer tolerance under water deficit conditions. In this research, 18 alfalfa genotypes from different geographical origins were evaluated under irrigated and rain-fed conditions in organically managed fields in Austria. Significant differences were found amongst harvests for Delta-shoot under both conditions while genotype by harvest interaction was only significant under irrigated condition. Drought stress under rain-fed condition reduced the overall mean of water use efficiency and carbon isotope discrimination responses(up to 34%), but the ratios of reduction differed for characters and genotypes. Narrow ranges were found for all traits especially for WUE-TBY (total biomass yield) (0.78 kg m(-3)) and Delta-shoot (0.53 parts per thousand) based on genotype means over locations and years, although variation and ranges were higher under irrigated condition. Regarding the variable and low correlations, simultaneous assessment of genotypes for Delta-shoot and biomass production can ensure the selection of superior genotypes and minimize potential biomass reductions that may result from using Delta-shoot as the only selection criterion to improve WUE. Sitel was the most water use efficient genotype(2.79 and 4.48 kg m(-3) based on shoot dry matter and total biomass,respectively) across two condition (widely adapted genotype) followed by Mohajeran, Fix232 and Verko under irrigated condition (as specific adapted genotypes) and Vlasta, Sanditi, Ghara-aghaj under rain-fed condition. (c) 2013 Elsevier B.V. All rights reserved.

  • A novel N-15 tracer model reveals: Plant nitrate uptake governs nitrogen transformation rates in agricultural soils

    Inselsbacher E, Wanek W, Strauss J, Zechmeister­‐Boltenstern S, Müller C
    2013 - Soil Biology and Biochemistry, 57: 301-310


    One major challenge in agriculture is improving the nitrogen (N) use efficiency of crop plants and at the same time reducing the losses of fertilizer N to the environment. The use of N-15 tracer studies in combination with process-based models has been proven to be a powerful tool for increasing our understanding of the dynamic interactions between soil, microbes and plants. Here we present a novel approach that includes plant uptake of fertilizer NH4+ and NO3-. We developed, evaluated and applied an analytical model allowing the simultaneous estimation of 14 processes within the N cycle using results from a previously published N-15 tracer study (Inselsbacher, E., Hinko-Najera Umana, N., Stange, P.C., Gorfer, M., Schuller, E., Ripka, K., Zechmeister-Boltenstern, S., Flood-Novotny, R., Strauss, J., Wanek, W., 2010. Short-term competition between crop plants and soil microbes for inorganic N fertilizer. Soil Biology & Biochemistry 42, 360-372]. The model revealed that plant NO3- uptake governed the overall N cycle during the 8-days greenhouse study. Nitrification was the main fate of NH4+ but its kinetics differed significantly between soils. The model-based calculations proved to be a major advancement compared to the commonly used calculations based on the pool dilution technique, due to the number of estimated parameters, their respective kinetic shifts over prolonged time periods and their explanatory power. In future N-15 tracer studies this analytical tool will allow accounting for the effect of plant N uptake on soil N transformations. (C) 2012 Elsevier Ltd. All rights reserved.

  • Oxygen isotopes in tree rings record variation in precipitation δ 18O and amount effects in the south of Mexico.

    Brienen RJW, Hietz P, Wanek W, Manuel G
    2013 - Journal of Geophysical Research – Biogeosciences, 118: 1604-1615


    Natural archives of oxygen isotopes in precipitation may be used to study changes in the hydrological cycle in the tropics, but their interpretation is not straightforward. We studied to which degree tree rings of Mimosa acantholoba from southern Mexico record variation in isotopic composition of precipitation and which climatic processes influence oxygen isotopes in tree rings (δ 18Otr). Interannual variation in δ 18Otr was highly synchronized between trees and closely related to isotopic composition of rain measured at San Salvador, 710 km to the southwest. Correlations with δ 13C, growth, or local climate variables (temperature, cloud cover, vapor pressure deficit (VPD)) were relatively low, indicating weak plant physiological influences. Interannual variation in δ 18Otr correlated negatively with local rainfall amount and intensity. Correlations with the amount of precipitation extended along a 1000 km long stretch of the Pacific Central American coast, probably as a result of organized storm systems uniformly affecting rainfall in the region and its isotope signal; episodic heavy precipitation events, of which some are related to cyclones, deposit strongly 18O-depleted rain in the region and seem to have affected the δ 18Otr signal. Large-scale controls on the isotope signature include variation in sea surface temperatures of tropical north Atlantic and Pacific Ocean. In conclusion, we show that δ 18Otr of M. acantholoba can be used as a proxy for source water δ 18O and that interannual variation in δ 18Oprec is caused by a regional amount effect. This contrasts with δ 18O signatures at continental sites where cumulative rainout processes dominate and thus provide a proxy for precipitation integrated over a much larger scale. Our results confirm that processes influencing climate-isotope relations differ between sites located, e.g., in the western Amazon versus coastal Mexico, and that tree ring isotope records can help in disentangling the processes influencing precipitation δ 18O .

  • Subsurface earthworm casts can be important soil microsites specifically influencing the growth of grassland plants

    Zaller JG, Wechselberger KF, Gorfer M, Hann P, Frank T, Wanek W, Drapela T
    2013 - Biology and Fertility of Soils, 49: 1097-1107


    Earthworms (Annelida: Oligochaeta) deposit several tons per hectare of casts enriched in nutrients and/or arbuscular mycorrhizal fungi (AMF) and create a spatial and temporal soil heterogeneity that can play a role in structuring plant communities. However, while we begin to understand the role of surface casts, it is still unclear to what extent plants utilize subsurface casts. We conducted a greenhouse experiment using large mesocosms (volume 45 l) to test whether (1) soil microsites consisting of earthworm casts with or without AMF (four Glomus taxa) affect the biomass production of 11 grassland plant species comprising the three functional groups grasses, forbs, and legumes, (2) different ecological groups of earthworms (soil dwellers-Aporrectodea caliginosa vs. vertical burrowers-Lumbricus terrestris) alter potential influences of soil microsites (i.e., four earthworms × two subsurface microsites × two AMF treatments). Soil microsites were artificially inserted in a 25-cm depth, and afterwards, plant species were sown in a regular pattern; the experiment ran for 6 months. Our results show that minute amounts of subsurface casts (0.89 g kg-1 soil) decreased the shoot and root production of forbs and legumes, but not that of grasses. The presence of earthworms reduced root biomass of grasses only. Our data also suggest that subsurface casts provide microsites from which root AMF colonization can start. Ecological groups of earthworms did not differ in their effects on plant production or AMF distribution. Taken together, these findings suggest that subsurface earthworm casts might play a role in structuring plant communities by specifically affecting the growth of certain functional groups of plants.

  • A closeup study of early beech litter decomposition: potential drivers and microbial interactions on a changing substrate

    Brandstaetter C, Keiblinger K, Wanek W, Zechmeister-Boltenstern S
    2013 - Plant and soil, 371: 139-154


    AIMS: Litter decomposition and subsequent nutrient release play a major role in forest carbon and nutrient cycling. To elucidate how soluble or bulk nutrient ratios affect the decomposition process of beech (Fagus sylvatica L.) litter, we conducted a microcosm experiment over an 8 week period. Specifically, we investigated leaf-litter from four Austrian forested sites, which varied in elemental composition (C:N:P ratio). Our aim was to gain a mechanistic understanding of early decomposition processes and to determine microbial community changes. METHODS: We measured initial litter chemistry, microbial activity in terms of respiration (CO2), litter mass loss, microbial biomass C and N (Cmic and Nmic), non purgeable organic carbon (NPOC), total dissolved nitrogen (TDN), NH4 +, NO3 - and microbial community composition (phospholipid fatty acids - PLFAs). RESULTS: At the beginning of the experiment microbial biomass increased and pools of inorganic nitrogen (N) decreased, followed by an increase in fungal PLFAs. Sites higher in NPOC:TDN (C:N of non purgeable organic C and total dissolved N), K and Mn showed higher respiration. CONCLUSIONS: The C:N ratio of the dissolved pool, rather than the quantity of N, was the major driver of decomposition rates. We saw dynamic changes in the microbial community from the beginning through the termination of the experiment. KEYWORDS: Leaf litter decomposition; Microbial biomass; Microbial community structure analysis; Microbial respiration; Microcosm

  • Host-compound foraging by intestinal microbiota revealed by single-cell stable isotope probing

    Berry D, Stecher B, Schintlmeister A, Reichert J, Brugiroux S, Wild B, Wanek W, Richter A, Rauch I, Decker T, Loy A, Wagner M
    2013 - Proceedings of the National Academy of Sciences of the United States of America (PNAS), 110: 4720-4725


    The animal and human intestinal mucosa secretes an assortment of compounds to establish a physical barrier between the host tissue and intestinal contents, a separation that is vital for health. Some pathogenic microorganisms as well as members of the commensal intestinal microbiota have been shown to be able to break down these secreted compounds. Our understanding of host-compound degradation by the commensal microbiota has been limited to knowledge about simplified model systems because of the difficulty in studying the complex intestinal ecosystem in vivo. In this study, we introduce an approach that overcomes previous technical limitations and allows us to observe which microbial cells in the intestine use host-derived compounds. We added stable isotope-labeled threonine i.v. to mice and combined fluorescence in situ hybridization with high-resolution secondary ion mass spectrometry imaging to characterize utilization of host proteins by individual bacterial cells. We show that two bacterial species, Bacteroides acidifaciens and Akkermansia muciniphila, are important host-protein foragers in vivo. Using gnotobiotic mice we show that microbiota composition determines the magnitude and pattern of foraging by these organisms, demonstrating that a complex microbiota is necessary in order for this niche to be fully exploited. These results underscore the importance of in vivo studies of intestinal microbiota, and the approach presented in this study will be a powerful tool to address many other key questions in animal and human microbiome research.

  • Nitrification rates in Arctic soils are associated with functionally distinct populations of ammonia-­‐oxidizing archaea

    Alves, RJE, Wanek W, Zappe A, Richter A, Svenning MM, Schleper C, Urich T
    2013 - The ISME Journal: multidisciplinary journal of microbial ecology, 7: 1620-1631


    The functioning of Arctic soil ecosystems is crucially important for global climate, and basic knowledge regarding their biogeochemical processes is lacking. Nitrogen (N) is the major limiting nutrient in these environments, and its availability is strongly dependent on nitrification. However, microbial communities driving this process remain largely uncharacterized in Arctic soils, namely those catalyzing the rate-limiting step of ammonia (NH3) oxidation. Eleven Arctic soils were analyzed through a polyphasic approach, integrating determination of gross nitrification rates, qualitative and quantitative marker gene analyses of ammonia-oxidizing archaea (AOA) and bacteria (AOB) and enrichment of AOA in laboratory cultures. AOA were the only NH3 oxidizers detected in five out of 11 soils and outnumbered AOB in four of the remaining six soils. The AOA identified showed great phylogenetic diversity and a multifactorial association with the soil properties, reflecting an overall distribution associated with tundra type and with several physico-chemical parameters combined. Remarkably, the different gross nitrification rates between soils were associated with five distinct AOA clades, representing the great majority of known AOA diversity in soils, which suggests differences in their nitrifying potential. This was supported by selective enrichment of two of these clades in cultures with different NH3 oxidation rates. In addition, the enrichments provided the first direct evidence for NH3 oxidation by an AOA from an uncharacterized Thaumarchaeota-AOA lineage. Our results indicate that AOA are functionally heterogeneous and that the selection of distinct AOA populations by the environment can be a determinant for nitrification activity and N availability in soils.

  • Interactions of nitrifying bacteria and heterotrophs: identification of a Micavibrio-like putative predator of Nitrospira spp.

    Dolinsek J, Lagkouvardos I, Wanek W, Wagner M, Daims H
    2013 - Applied and Environmental Microbiology, 79: 2027-2037


    Chemolithoautotrophic nitrifying bacteria release soluble organic compounds, which can be substrates for heterotrophic microorganisms. The identities of these heterotrophs and the specificities of their interactions with nitrifiers are largely unknown. In this study, we incubated nitrifying activated sludge with (13)C-labeled bicarbonate and used stable isotope probing of 16S rRNA to monitor the flow of carbon from uncultured nitrifiers to heterotrophs. To facilitate the identification of heterotrophs, the abundant 16S rRNA molecules from nitrifiers were depleted by catalytic oligonucleotides containing locked nucleic acids (LNAzymes), which specifically cut the 16S rRNA of defined target organisms. Among the (13)C-labeled heterotrophs were organisms remotely related to Micavibrio, a microbial predator of Gram-negative bacteria. Fluorescence in situ hybridization revealed a close spatial association of these organisms with microcolonies of nitrite-oxidizing sublineage I Nitrospira in sludge flocs. The high specificity of this interaction was confirmed by confocal microscopy and a novel image analysis method to quantify the localization patterns of biofilm microorganisms in three-dimensional (3-D) space. Other isotope-labeled bacteria, which were affiliated with Thermomonas, colocalized less frequently with nitrifiers and thus were commensals or saprophytes rather than specific symbionts or predators. These results suggest that Nitrospira spp. are subject to bacterial predation, which may influence the abundance and diversity of these nitrite oxidizers and the stability of nitrification in engineered and natural ecosystems. In silico screening of published next-generation sequencing data sets revealed a broad environmental distribution of the uncultured Micavibrio-like lineage.

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